PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015734-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 359aa    MW: 39785.8 Da    PI: 6.6308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015734-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.6e-14172218354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  WALNUT_00015734-RA 172 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 218
                         79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-15173228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-15173227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-5182221No hitNo description
Gene3DG3DSA:3.30.70.2604.2E-5254305No hitNo description
CDDcd048732.20E-6254332No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MCGKKLEEDR GECSQTVDNI NMIQSFQEQL FHQQQQQIML QHQQQNSDIY GGGRGLIFPQ  60
VSPISLQPWP LPPVHAFSPA GHFATNPVRD HHDPLNIVPP TPSSFAGLFN RRPPPDHLQF  120
AYDDHGPSSD HLRIISDTLV PQPGSAPFGL QAELGKMTAQ EIMDAKALAA SKSHSEAERR  180
RRERINNHLA KLRSLLPNTT KTDKASLLAE VIQHVKELKR QTSLIAETNP VPTEVDELTV  240
DTSDEDGKFV IKASLSCEDR SDLLPDLIKT LKSLRLRTLK AEITTLGGRV KNVLLVSGDE  300
DSISSSTSGE KQQQQQQRHC ISSIEEALKA VMEKTAGDES SSGSVKRQRT TNINILEHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021594.11e-162PREDICTED: transcription factor bHLH30-like
RefseqXP_011021607.11e-162PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-103BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0B0N1U51e-164A0A0B0N1U5_G
STRINGPOPTR_0008s11490.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-83bHLH family protein